scverse 开源项目推荐（64 个）

scverse /scanpy

Python中的单细胞分析。扩展至> 1亿个细胞。

scverse /scvi-tools

单细胞和空间组学数据的深度概率分析

scverse /anndata

Annotated data.

scverse /squidpy

Spatial Single Cell Analysis in Python

scverse /rapids-singlecell

rapids-singlecell: GPU-accelerated framework for scRNA analysis

scverse /spatialdata

An open and interoperable data framework for spatial omics data

theislab /ehrapy

Electronic Health Record Analysis with Python.

scverse /pertpy

Single-cell perturbation analysis

rendeirolab /LazySlide

Accessible and interoperable whole slide image analysis for digital pathology in Python

scverse /SnapATAC2

Single-cell epigenomics analysis tools

scverse /decoupler

Python package to perform enrichment analysis from omics data.

scverse /muon

muon is a multimodal omics Python framework

scverse /scirpy

A scanpy extension to analyse single-cell TCR and BCR data.

icbi-lab /infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

scverse /mudata

Multimodal Data (.h5mu) implementation for Python

nf-core /scdownstream

用于QC、集成和使数据可呈现的单细胞转录组学管道

YosefLab /scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics

aertslab /CREsted

CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for designing cell type-specific sequences.

scverse /scvi-tutorials

scvi-tools 教程中使用的笔记本

scverse /pytometry

Flow & mass cytometry analytics.