scvi-tools 开源项目推荐（34 个）

YosefLab /scib-metrics

Accelerated, Python-only, single-cell integration benchmarking metrics

scverse /scvi-tutorials

scvi-tools 教程中使用的笔记本

scverse /scvi-tools-skeleton

Template repository for creating novel models with scvi-tools

YosefLab /scviva-tools

scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis

Project-PokeBots /SCVI_PokeManager

A PKHeX compatible dumper and injector for Pokémon Scarlet and Violet.

brickmanlab /proks-salehin-et-al

Deep Learning Based Models for Preimplantation Mouse and Human Development

NKI-CCB /sobolev_alignment

Sobolev alignment of deep probabilistic models for comparing single cell profiles

mtvector /scANTIPODE

Variational Inference for Cell Type Evolution

brickmanlab /scanvi-explainer

scANVI Explainer

MMatinGerami /crc-singlecell-reference-mapping

Cross-cohort cell-type annotation of colorectal cancer scRNA-seq with scVI and scANVI: open-set novelty, calibration and conformal coverage under cohort and hospital shift

aws-samples /sample-agentcore-scverse

该项目在 GitHub 上没有填写描述

scverse /scvi-colab

Lightweight helper to install scvi-tools in Google Colab

YosefLab /scvi-tools-mcp

MCP (Model Context Protocol) server for deep probabilistic analysis of single-cell omics data using scvi-tools

poloarol /scrna-analysis-tutorials

scRNA Analysis tutorials

sachitsatyal /Immunomap

Immune cell-type annotation for blood scRNA-seq. scANVI with reference mapping, calibrated confidence and Unknown detection; benchmarked against logistic regression and a LoRA-fine-tuned Geneformer. Live demo on Hugging Face.

ChengYu040204 /bonemarrowmap-sae

Sparse autoencoders on scVI latent space of the BoneMarrowMap haematopoietic atlas: functional programme discovery, RAG-LLM annotation, cross-lineage FP-Tree and progenitor commitment

lwang-genomics /gyrevi

A variational autoencoder (VAE) for joint inference of cyclical dynamics and cellular state from single-cell RNA-seq data

orestasdulinskas /gastrulation-scRNAseq

Single-cell RNA-seq analysis of mouse gastrulation using data from Argelaguet and Pijuan-Sala. The project includes preprocessing, SCVI-based dataset integration, differential gene expression analysis, and a no-code interface powered by Chatmol for natural language interaction with the pipeline.

gauravsinghrathore /MiSTR_atlas

Code for the MiSTR microfluidic stem cell atlas study of early human neural patterning.

ramtinmt /aged-lung-fibrosis-scrnaseq

Single-cell RNA-seq analysis of ~100k lung cells: Scanpy, scVI integration, cell-type annotation and CellChat signalling