nextflow 开源项目推荐（1,386 个）

nextflow-io /nextflow

用于数据驱动计算流水线的 DSL

nf-core /rnaseq

使用STAR、RTEM、HISAT 2或Salmon的RNA测序分析管道，具有基因/同工型计数和广泛的质量控制。

datavzrd /datavzrd

A tool to create visual HTML reports from collections of CSV/TSV tables

nextflow-io /awesome-nextflow

A curated list of nextflow based pipelines

nf-core /sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

bactopia /bactopia

A flexible pipeline for complete analysis of bacterial genomes

nf-core /modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nextflow-io /patterns

A curated collection of Nextflow implementation patterns

nf-core /scrnaseq

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

nf-core /tools

Python package with helper tools for the nf-core community.

nf-core /mag

Assembly and binning of metagenomes

lynnlangit /gcp-for-bioinformatics

GCP for Bioinformatics Researchers

nextflow-io /training

Nextflow training material

nf-core /ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

assemblerflow /flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

nvuillam /npm-groovy-lint

Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line

nf-core /chipseq

ChIP-seq 峰识别、QC 和差异分析流程。

nf-core /atacseq

ATAC-seq peak-calling and QC analysis pipeline

nf-core /nanoseq

Nanopore demultiplexing, QC and alignment pipeline

nf-core /eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline