enrichment-analysis 开源项目推荐（175 个）

YuLab-SMU /clusterProfiler

：bar_chart：用于解释组学数据的通用丰富工具

scverse /gget

Glugget能够高效查询基因组参考数据库

zqfang /GSEApy

Gene Set Enrichment Analysis in Python

scverse /decoupler

Python package to perform enrichment analysis from omics data.

YuLab-SMU /enrichplot

Visualization of Functional Enrichment Result

YuLab-SMU /DOSE

😷 Disease Ontology Semantic and Enrichment analysis

YuLab-SMU /biomedical-knowledge-mining-book

📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

igordot /msigdbr

MSigDB gene sets for multiple organisms in a tidy data format

epigen /enrichment_analysis

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

kerseviciute /aPEAR

Enrichment Networks for Pathway Enrichment Analysis

GangLiLab /genekitr

🧬 Gene analysis toolkit based on R

baryshnikova-lab /safepy

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

YuLab-SMU /ReactomePA

Reactome Pathway Analysis

sk-sahu /sig-bio-shiny

A standalone interactive application for detecting biological significance on a set of genes

amarinderthind /RNA-seq-tutorial-for-gene-differential-expression-analysis

This RNAseq data analysis tutorial is created for educational purpose

stracquadaniolab /pygna

A Python package for gene network analysis

ELTEbioinformatics /mulea

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

gladstone-institutes /Interactive-Enrichment-Analysis

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

jmw86069 /multienrichjam

Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results

Kumquatum /GWENA

Gene Co-expression Network analysis pipeline