bcftools 开源项目推荐（88 个）

davetang /learning_vcf_file

学习变体呼叫格式

digo4 /Clinical-Genomics

这里我们将讨论使用 GATK 最佳实践流程对人类数据集进行变异检测。

mnievesc /Ancient_mtDNA_Pipeline

用于处理古线粒体 DNA 靶向富集捕获后获得的配对末端 Illumina 读长的分析流程。

PavlidisLab /bioluigi

可复用且持续维护的 Luigi 任务，可集成到生物信息学流程中

biocpp /biocpp-io

BioC++ 输入/输出库

DylanCosto /pasta

A native Rust SAM/BAM/CRAM/VCF/BCF library, with ntools and vtools

YuliaNuzhnenko /bioinformatics-one-liners

精选的高效 Linux、AWK、SAMtools、BCFtools、SeqKit 和 Python 单行命令速查表，用于日常基因组数据处理。

TRON-Bioinformatics /tronflow-vcf-postprocessing

A Nextflow variant normalization pipeline based on vt and bcftools

scholl-lab /vcf-filtering

A collection of scripts for filtering annotated variant call format files

sdhutchins /vcf-prepping

Scripts used on a cluster that demonstrate vcf file manipulation and preparation.

refmyoussef-source /mdr-pa-genomic-epidemiology

A reproducible Snakemake pipeline for the high-throughput genomic epidemiology of 96 MDR P. aeruginosa strains (BioProject PRJNA771342).

RhettRautsaw /VariantCaller

VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.

collaborativebioinformatics /Blended_seq_imputation

a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing

yenon118 /VisualVariants

The goal of this project is to create a R package and executable scripts to visualize variants in Variant Call Format (VCF) files and Bcftools processed tab-delimited files.

AstraBert /silly-gat-kay

Repository for Docker image astrabert/silly-gat-kay info and changelog

RGenomicsETL /RBCFTools

Bundled 'FastDup', 'Samtools', 'BCFtools', and 'HTSlib' Utilities

ozankiratli /FilteringFalsePositives

This script filters false positive alleles from poolseq VCF file created with bcftools.

AnstMikh /DNA

流水线：从SRA、BED、VCF到PLINK的

sounkou-bioinfo /RBCFLib

`htslib` And `bcftools` Libraries And Command Line Tools Wrapper

openb-io /ibd-pipeline

convert genotype array output into annotated IBD segments