fastqc 开源项目推荐（137 个）

robertaboukhalil /fastq.bio

An interactive web tool for quality control of DNA sequencing data

fastqc-rs /fastqc-rs

A quality control tool for FASTQ files written in rust

digo4 /Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

angelovangel /faster

A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust

nf-core /hgtseq

A pipeline to investigate horizontal gene transfer from NGS data

PavlidisLab /rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

ChillarAnand /fadapa

FAstqc DAta PArser - A minimal parser to parse FastQC output data.

angelovangel /nxf-fastqc

A simple fastp-MultiQC nextflow pipeline

mnievesc /Ancient_mtDNA_Pipeline

Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.

hanielcedraz /BAQCOM

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

mehdimerbah /WES

该项目在 GitHub 上没有填写描述

ewels /FastQC-Rust

A fork of FastQC, rewritten in Rust with faithful replication of outputs

BryanAbuchery /16S-rRNA-End-to-End-Analysis

Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

sequana /fastqc

sequana pipeline to perform parallel fastqc and summarize results with multiqc plot

Morgan-Feuz /fastqc

Installation and usage of FastQC for fastq file quality control analysis.

bixBeta /CFG

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

lvn3668 /fastqcparser

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …

gustaveroussy /rna-count-kallisto

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

rvrane /FASTQ-preprocess

Modular FASTQ preprocessing pipeline for quality control (FastQC/MultiQC) and adapter trimming (Cutadapt/Trimmomatic) of NGS sequencing data

tdayris-perso /wes-mapping-bwa-gatk

Map and post-process your bams for SNP calling