vcf-files 开源项目推荐（109 个）

edgardomortiz /vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

davetang /learning_vcf_file

学习变体呼叫格式

zhanxw /rvtests

用于下一代测序数据的罕见变异检验软件。

chasewnelson /SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Al-Murphy /MungeSumstats

Rapid standardisation and quality control of GWAS or QTL summary statistics

pwwang /vcfstats

Powerful statistics for VCF files

jonas-fuchs /BAMdash

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks

py-vobject /vobject

A full-featured Python package for parsing and creating iCalendar and vCard files

everestial /VCF-Simplify

A python parser to simplify and build the VCF (Variant Call Format).

bio-ontology-research-group /phenomenet-vp

A phenotype-based tool for variant prioritization in WES and WGS data

cccnrc /plot-VCF

visual analysis of your VCF files

raleighlittles /SMS-backup-and-restore-extractor

A simple Python script for extracting images out of an "SMS Backup & Restore" backup.

dancooke /starfish

Intersect multiple VCF files with haplotype awareness

ikmb /vcf2prot

Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

refresh-bio /VCFShark

VCF file compressor reaching over 30-fold efficiency on massive genotype datasets, with processing speeds up to 100 MB/s and peak memory usage below 30 GB.

jonas-fuchs /virHEAT

Visualize microbial evolution at the SNP level!

isinaltinkaya /vcfgl

Genotype likelihood simulator for VCF/BCF files

refresh-bio /GTC

Ultrafast VCF GenoType Compressor (GTC) with instant random access, shrinking the 4.3 TB HRC dataset (27k samples, 40M variants) down to under 4 GB.

lifeomic /spark-vcf

Spark VCF data source implementation for Dataframes

rasmushenningsson /VariantCallFormat.jl

Read and write VCF and BCF files