cutadapt 开源项目推荐（20 个）

digo4 /Clinical-Genomics

这里我们将讨论使用 GATK 最佳实践流程对人类数据集进行变异检测。

y9c /cutseq

✂️ Trim sequencing adapters from NGS data automatically

frederic-mahe /nf-metabarcoding

Fred's metabarcoding pipeline with Nextflow

rvrane /FASTQ-preprocess

Modular FASTQ preprocessing pipeline for quality control (FastQC/MultiQC) and adapter trimming (Cutadapt/Trimmomatic) of NGS sequencing data

frederic-mahe /nf-pore2taxa

quick taxonomic assignment of Nanopore metabarding data

Pinky-cloud224 /snakemake_workflow_rna_seq_data_analysis

该项目在 GitHub 上没有填写描述

maddesm /Bachelor-s-Thesis

Bioinformatics Bachelor's Thesis

Shakshi-N /NGS-Data-Analysis

Reproducible NGS data analysis pipeline for SRA datasets, covering raw-read QC, adapter and quality trimming, post-trimming QC, MultiQC reporting, read alignment, BAM processing, and downstream analysis.

KARCOR /its-amplicon-pipeline

Pipeline reproducible de bioinformática para secuenciación de amplicón ITS (DADA2, cutadapt, diversidad alfa/beta) — con tests automatizados y CI.

rvrane /GenoMap-hg38

Modular shell pipeline for adapter trimming, genome alignment to GRCh38, and chromosome-level read mappability profiling using Bowtie2 and SAMtools

pankhilpandya01-star /bioinformatics-project-09-fastq-trimming-explorer

Traceable single-end FASTQ quality and adapter trimming with exact per-read accounting and before/after QC.

hisplan /docker-cutadapt

Dockerized cutadapt

LeoooJR /ReproHackathon

一个可复现的RNA-Seq分析流程，用于抗生素胁迫下的金黄色葡萄球菌，利用Nextflow和Singularity。该流程包括基因组比对、reads计数和统计分析，以识别差异表达基因（DEGs）并生成关键可视化结果。

subhakanta0606 /NGS-pipeline

This repository contains the code pipeline I developed for Next Generation Sequencing (NGS) analysis during my internship at CSIR-IGIB, New Delhi. The project was completed under the guidance of Mr. Sunil Nagpal and Dr. Bhupesh Taneja. For detailed instructions and a better understanding of pipeline, please refer to the README.md file.

DavideScarpetta /taxonomic_profiling

Metabarcoding analysis pipeline, using DADA2 and qiime2

seek-hope /bioinfo-tools-dist

Prebuilt binaries for bioinfo-tools: rust-cutadapt and rust-umitools

Prokash21 /small-non-coding-RNA

Cell-surface glycoRNA-based cancer detection.

GenomicaMicrob /pair-end_cleaner

Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).

cyverseuk /cutadapt

该项目在 GitHub 上没有填写描述

Rudie-K /UoS-eDNA-Bioinformatics

Automated environmental DNA (eDNA) metabarcoding pipeline for converting NCBI SRA sequencing data into taxonomically annotated species tables.