vcf 开源项目推荐（741 个）

hail-is /hail

Cloud-native genomic dataframes and batch computing

samtools /htslib

用于高通量测序数据格式的 C 库

tseemann /snippy

✂️ ⚡ Rapid haploid variant calling and core genome alignment

lennart-k /rustical

a calendar server aiming to be simple, fast and passwordless

jeroendesloovere /vcard

This vCard PHP library can easily parse or generate/export vCards as .vcf

Illumina /hap.py

Haplotype VCF comparison tools

brentp /cyvcf2

cython + htslib == fast VCF and BCF processing

ACEnglish /truvari

Structural variant toolkit for VCFs

fritzsedlazeck /SURVIVOR

Toolset for SV simulation, comparison and filtering

mskcc /vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

brentp /vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files

kcleal /gw

Genome browser and variant annotation

edgardomortiz /vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

tariqdaouda /pyGeno

个性化基因组学与蛋白质组学。主食：Ensembl，配菜：SNP

samtools /htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

sigven /pcgr

Personal Cancer Genome Reporter (PCGR)

bioSyntax /bioSyntax

Syntax highlighting for computational biology

helicalAI /helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

igordot /genomics

A collection of scripts and notes related to genomics and bioinformatics

PharmGKB /PharmCAT

The Pharmacogenomic Clinical Annotation Tool