gwas 开源项目推荐（606 个）

hail-is /hail

Cloud-native genomic dataframes and batch computing

MareesAT /GWA_tutorial

A comprehensive tutorial about GWAS and PRS

Cloufield /GWASTutorial

GWAS Tutorial for Beginners

projectglow /glow

An open-source toolkit for large-scale genomic analysis

sgkit-dev /sgkit

Scalable genetics toolkit

dnanexus-archive /UKB_RAP

访问在英国生物库（UKBB）研究应用平台上使用的共享审查代码和笔记本。包括来自DNAnexus网络研讨会、在线培训和研讨会的资源。

BGI-shenzhen /LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

AdmiralenOla /Scoary

Pan-genome wide association studies

JianYang-Lab /gsMap

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

JonJala /mtag

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

choishingwan /PRSice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

martinjzhang /scDRS

Single-cell disease relevance score (scDRS)

JoniColeman /gwas_scripts

Codebook from my GWAS cookbook

stephenturner /qqman

An R package for creating Q-Q and manhattan plots from GWAS results

statgen /locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

aehrc /VariantSpark

machine learning for genomic variants

zhanxw /rvtests

Rare variant test software for next generation sequencing data

omerwe /polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

mgalardini /pyseer

SEER, reimplemented in python 🐍🔮

boxiangliu /locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.