DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Official code repository for GATK versions 4 and up
Data intensive science for everyone.
SPAdes Genome Assembler
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Analysis of single cell RNA-seq data course
Simple & Efficient data access for Scala and Scala.js
A repository for setting up a RNAseq workflow
A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom actions.
Structural variant toolkit for VCFs
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Rapid large-scale prokaryote pan genome analysis
A human-made, free/open, beginner-friendly, minimal and human-readable language for the live coding of algorithmic electronic music performances
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
Analysis Pipeline for Single Cell ATAC-seq
SortMeRNA: next-generation sequence filtering and alignment tool
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)