DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Official code repository for GATK versions 4 and up
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Scientific Large Language Models: A Survey on Biological & Chemical Domains
GenomeTools genome analysis system.
Genome annotation with AUGUSTUS
🔬 Assemble large genomes using short reads
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
Nanopore sequence read simulator
A genome browser designed for complex structural variants and long reads.