cram 开源项目推荐（44 个）

samtools /htslib

用于高通量测序数据格式的 C 库

ZeKaiNie /universal-examprep-skill

作为克劳德特工技能的昨晚应试教练：将您的幻灯片、笔记和过去的论文变成一个章节知识库+测验库，只教您材料中的内容，绝不捏造（测量100%超出范围的描述）。双语EN/中文 -期末极速应试技能。

samtools /htsjdk

用于高通量测序数据（HTS）格式的 Java API。

divonlan /genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Griffan /VerifyBamID

verifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

chrovis /cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure

gregzanch /cram

cram is a computational room acoustics module to simulate and explore various acoustic properties of a modeled space

sbslee /fuc

Frequently used commands in bioinformatics

prysk /prysk

Functional tests for command line applications

fulcrumgenomics /ref-solver

Identify which human reference genome was used to align a BAM/SAM/CRAM file

biosails /pheniqs

Fast and accurate sequence demultiplexing

ncherric /Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

nf-cmgg /structural

一个生物信息学最佳实践分析流程，用于从短 DNA 测序读段中检测结构变异（SV）、拷贝数变异（CNV）和重复区域扩增（RRE）

nf-cmgg /smallvariants

一个用于从短 DNA 测序读段中检测并注释 WES 和 WGS 数据中小型生殖系变异的 Nextflow 流程

samoht /ocaml-k7

Generate and run Charmbracelet VHS tapes from OCaml, and record cram tests as terminal GIFs.

brentp /bpbio

basepair bio: a single binary with many useful genomics subtools.

DylanCosto /pasta

A native Rust SAM/BAM/CRAM/VCF/BCF library, with ntools and vtools

dnncha /turbo-picard

Picard-compatible Rust tools for faster SAM/BAM/CRAM, VCF, duplicate-marking and sequencing-QC workflows.

victormar1 /rubam

Pure-Rust BAM/VCF/BCF depth, pileup, variants & stats with Python bindings — native Linux/macOS/Windows wheels, pysam-parity, no htslib.

brentp /bedder-rs

an API for intersections of genomic data