infectious-diseases 开源项目推荐（185 个）

sanger-pathogens /Roary

Rapid large-scale prokaryote pan genome analysis

SORMAS-Foundation /SORMAS-Project

SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.

EpiModel /EpiModel

Mathematical Modeling of Infectious Disease Dynamics

sanger-pathogens /snp-sites

Finds SNP sites from a multi-FASTA alignment file

sanger-pathogens /Artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

sanger-pathogens /circlator

A tool to circularize genome assemblies

nickjcroucher /gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

CSSEGISandData /COVID-19_Unified-Dataset

Unified COVID-19 Dataset

sanger-pathogens /ariba

Antimicrobial Resistance Identification By Assembly

sanger-pathogens /assembly-stats

Get assembly statistics from FASTA and FASTQ files

chanzuckerberg /czid-web

Infectious Disease Sequencing Platform

sanger-pathogens /pathogen-informatics-training

该项目在 GitHub 上没有填写描述

jangevaare /Pathogen.jl

使用 Julia 对个体级传染病模型进行模拟、可视化和推断

sanger-pathogens /Fastaq

Python3 scripts to manipulate FASTA and FASTQ files

sanger-pathogens /iva

de novo virus assembler of Illumina paired reads

sanger-pathogens /assembly_improvement

Improve the quality of a denovo assembly by scaffolding and gap filling

antonin-lfv /simulation_virus_covid-19

Python Virus Simulation: Model and visualize epidemic spread using mathematical models (SIR) and interactive dashboards.

KendrickOrg /kendrick

Domain-Specific Modeling for Epidemiology

KrishnaswamyLab /ImmunoStruct

[𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

andrewjpage /tiptoft

Predict plasmids from uncorrected long read data