pathway-enrichment-analysis 开源项目推荐（58 个）

broadinstitute /ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

rcastelo /GSVA

Gene set variation analysis

egeulgen /pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

saezlab /CARNIVAL

CAusal Reasoning for Network Identification with integer VALue programming in R

JEFworks /liger

Lightweight Iterative Gene set Enrichment in R

sigven /oncoEnrichR

Explore the cancer relevance of your gene list

hamidghaedi /Enrichment-Analysis

From RNA-seq raw reads to enriched pathways by DEGs

hancockinformatics /pathlinkR

Analysis and visualization of RNA-Seq results

wikipathways /pywikipathways

Python Client Package for WikiPathways

maflot /Diceplot

R package for visualising high-dimensional categorical data

jmw86069 /multienrichjam

基因集富集分析结果的多重富集分析

dvklopfenstein /ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

TheKinaseLibrary /kinase-library

The Kinase Library: a Global Atlas of the Human Protein Kinome

tucca-cellag /tucca-rna-seq

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

wikipathways /wikipathways-database

WikiPathways Database

cwieder /py-ssPA

Single sample pathway analysis tools for omics data

pathwayforte /pathway-forte

一个用于功能丰富和分类方法的路径数据库基准测试的Python软件包

AberystwythSystemsBiology /pyMEAN

A Python package for metabolite enrichment analysis.

Greco-Lab /FunMappOne

FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.

daisybio /keypathwayminer-R

R package for de novo pathway enrichment using KeyPathwayMiner