clusterprofiler 开源项目推荐（27 个）

YuLab-SMU /biomedical-knowledge-mining-book

📖 Biomedical knowledge mining using GOSemSim and clusterProfiler

jmw86069 /multienrichjam

Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results

tucca-cellag /tucca-rna-seq

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

raymondkiu /R-scripts-graphing-statistics

My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

ycl6 /GO-Enrichment-Analysis-Demo

Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output

francescopatane96 /RNA-seq_Pipeline

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

noriakis /cpbnplot

Bayesian network plot for the enrichment analysis results

Thomas-Rauter /GOcontext

Context-aware restriction of the Gene Ontology (GO) for enrichment analysis.

amuhsenali /tcga-brca-rnaseq-degs-ml

End-to-end RNA-seq pipeline on TCGA-BRCA (213 samples): DESeq2 differential expression, clusterProfiler functional enrichment, and ML-based biomarker ranking (Random Forest, LASSO, SVM) achieving >96% classification accuracy

pandeyravi15 /scrnaseq-retinal-pigment-epithelium

Single-cell RNA-seq analysis — Pandey et al. 2022

jiweichen28-web /01_GEO-CRC-GSE50760

Bulk RNA-seq analysis of colorectal cancer (GSE50760): QC, differential expression (limma), and GO/KEGG/GSEA enrichment in R

albertme0308 /GSApp

GSApp Pathway Analysis

andreyhgl /containeR-gene-ontology

Singularity container for running gene ontology anlaysis

tpurcell0122github /Trade-Ahead

An investment advisory firm needs to segment stock offerings so they may offer their customers understandable investment options.

wxski-stealth /scRNAseq-glioma-GSE138794

Reproduction of the human glioma single-cell atlas (GSE138794): Seurat + Harmony + clusterProfiler

Saloni-Bio-info /nasal-swab-sarscov2-dge

Differential gene expression and GSEA analysis of nasal swab RNA-seq data comparing SARS-CoV-2 infection vs no-virus samples, using the limma-voom pipeline and clusterProfiler.

ghoshparnabali /SARS-CoV-2_RNA-Seq_Differential-Gene-Expression_Analysis

This repository contains an end-to-end RNA-Seq DGE Analysis pipeline built in RStudio to analyze host transcriptional responses to SARS-CoV-2 across multiple cell lines. Using raw read counts from the GSE147507 benchmark study, this pipeline handles complex multi-condition experimental matrices and implements rigorous quality-control protocols.

mailtopurnimams-29 /Project_UnsupervisedLearning

Project Goal: To segment credit card customers based on spending patterns and interactions for targeted marketing. Role: Conducted EDA, applied clustering algorithms, reduced dimensions, and profiled segments. Helped identify key customer segments, enabling the bank to tailor services and improve customer engagement

kusah /ColorectalML

Colorectal adenoma vs normal mucosa classifier from gene-expression data (GSE8671), validated on an independent cross-platform cohort (GSE50114). Logistic Regression, SVM and Random Forest with patient-grouped CV, plus limma DEG, GO and KEGG analysis and a Streamlit dashboard.

armilner /r-bioinformatics-2026

Comprehensive R bioinformatics container — single-cell, bulk RNA-seq, methylation, ATAC-seq, and pathway analysis (2026)