pathway-analysis 开源项目推荐（180 个）

YuLab-SMU /enrichplot

Visualization of Functional Enrichment Result

cafferychen777 /ggpicrust2

让 Picrust2 输出分析与可视化更简单

nsalomonis /altanalyze

AltAnalyze 是一个多功能且易于使用的软件包，用于自动化的单细胞和批量基因及剪接分析。可从我们的网站获取易于使用的预编译图形用户界面版本。

igordot /msigdbr

MSigDB gene sets for multiple organisms in a tidy data format

federicomarini /GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

jackbibby1 /SCPA

R package for pathway analysis in scRNA-seq data

iiasa /ipcc_sr15_scenario_analysis

Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C

iVis-at-Bilkent /newt

A web application to visualize and edit pathway models

iVis-at-Bilkent /pathway-mapper

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

cxli233 /ggpathway

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

PathwayAndDataAnalysis /causalpath

A project for exploring differentially active signaling paths related to proteomics datasets

reactome /reactome2py

python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.

qbic-pipelines /rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

raeslab /omixer-rpm

A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.

dvklopfenstein /ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

mims-harvard /pathways

Disease pathways in the human interactome

PathwayMerger /PathMe

Harmonizing pathway databases using Biological Expression Language (BEL)

cwieder /PathIntegrate

PathIntegrate Python package for pathway-based multi-omics data integration

futianfan /GenoCraft

GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)

raeslab /GMMs

A manually curated database of human gut metabolic modules.