ngs-pipeline 开源项目推荐（170 个）

flowhub-team /awesome-omics

A collection of awesome things regarding all omics.

patidarr /ngs_pipeline

使用snakemake实现外显子组/捕获/RNASeq流水线

praneet1988 /CSBB-Shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

NLM-DIR /pm4ngs

Project Manager for NGS data analysis

NLM-DIR /cwl-ngs-workflows-cbb

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

nf-cmgg /structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads

caulilin /QTG_Seq

该项目在 GitHub 上没有填写描述

epigen /open_pipelines

Pipelines for NGS data preprocessing by the Bock lab and friends

viromelab /tracespipe

Reconstruction and analysis of viral and host genomes at multi-organ level

hivdb /codfreq

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

nf-cmgg /smallvariants

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

NCBI-Hackathons /FlowBio

A fast, easy way to present complex bioinformatics pipelines to biologists

angelovangel /nxf-fastqc

A simple fastp-MultiQC nextflow pipeline

BioinformaticsOnLine /setu

SARS-CoV-2 Genome Assembler

dmnfarrell /snipgenie

command line and desktop tool for microbial variant calling

Hughes-Genome-Group /NGseqBasic

Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data

rusalkaguy /snakemake-slurm-tutorial

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

nf-core /denovohybrid

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

zhanghao-njmu /NGSmodule

A flexible, automation and pragmatic workflow tool to process the NGS data.

mehdimerbah /WES

该项目在 GitHub 上没有填写描述