omics 开源项目推荐（360 个）

omicverse /omicverse

用于多组学的Python库包括批量、单细胞和空间RN-seq分析。

scikit-bio /scikit-bio

scikit-bio：一个社区驱动的生物信息学Python库，提供通用的数据结构、算法和教育资源。

hujingshuang /MTrans

Multi-source Translation

flowhub-team /awesome-omics

关于所有组学的精彩内容合集。

heise3 /ExtremaRank

Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk

mixOmics-org /mixOmics

Development repository for the Bioconductor package 'mixOmics '

geniusrise /awesome-healthcare-datasets

Healthcare and biomedical datasets, for AI/ML

mims-harvard /Medea

Medea：一种用于治疗发现的组学人工智能代理

nasa /GeneLab_Data_Processing

Standard bioinformatics pipelines for omics data from spaceflight and space-relevant experiments.

bigomics /omicsplayground

Visual self-service analytics platform for big omics data.

rajewsky-lab /openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

saezlab /corneto

基于组学数据的统一知识驱动网络推断

pachterlab /voyager

From geospatial to spatial -omics

camlab-bioml /rakaia

Scalable spatial omics in the browser for hundreds of samples at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/

fraenkel-lab /OmicsIntegrator2

Prize-Collecting Steiner Forests for Interactomes

jpquast /protti

Picotti lab data analysis package.

biocore /gneiss

compositional data analysis toolbox

enveda /computational-metabolomics-review

Trends in Computational Metabolomics (2021–2025)

scDataset /scDataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

cafferychen777 /MicrobiomeStat

追踪、分析、可视化：用MicrobiomeStat揭开你的微生物组的时间模式