hiv 开源项目推荐（148 个）

cbg-ethz /V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

EMOD-Hub /EMOD

Source files for building the IDM EMOD disease transmission model.

CDCgov /MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

niemasd /FAVITES

FAVITES (FrAmework for VIral Transmission and Evolution Simulation)

EpiModel /EpiModelHIV

R package for network models of HIV and STI transmission: the engine version used in each published paper, by release tag

theLongLab /CATE

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8

hivdb /codfreq

用于 HIV-1 和 SARS-CoV-2 的 FASTQ-to-CodFreq 流程

AABoyles /MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

fastdatascience /clinical_trial_risk

Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science

AMPATH /ng2-amrs

Point of care system for AMPATH clinics

HKU-BAL /ClusterV

ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

R-HTA-in-LMICs /Advanced-Tutorial-2022

A repository for the Advanced Programming Tutorial that teaches you how to develop an interactive model using Shiny

hargrove-lab /QSAR

The diversity of RNA structural elements and their documented role in human diseases make RNA an attractive therapeutic target. However, progress in drug discovery and development has been hindered by challenges in the determination of high-resolution RNA structures and a limited understanding of the parameters that drive RNA recognition by smal…

MullinsLab /viroverse

a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows

lucblassel /HIV-DRM-machine-learning

This repo contains the data and software used to run the analyses in the "Using machine learning and Big data to explore the drug resistance landscape in HIV"

SACEMA /inctools

Incidence Estimation Tools

deforay /intelis

A simple, open source Sample Management System for Viral Load, EID and Covid-19 testing.

MicroBioGenoHub /HIV-DRIVES

A comprehensive pipeline for HIV drug resistance identification, variant evaluation, and surveillance.

cfe-lab /CFEIntact

A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

ilypopv /The-shadow-of-HIV

🦠Research project in Bioinformatics Institute 2023-2024