cancer 开源项目推荐（1,037 个）

nf-core /sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

BMIRDS /deepslide

《自然科学报告》论文代码，题为“深神经网络切除肺腺癌切片的病理学层面组织学模式分类”。用于高分辨率全片图像分类的滑动窗口框架，通常用于显微镜或组织病理图像。

seandavi /awesome-cancer-variant-resources

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

tariqdaouda /pyGeno

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

suhrig /arriba

利用RN-Seq数据快速准确地检测基因融合

keller-mark /awesome-biological-visualizations

A list of web-based interactive biological data visualizations.

judegomila /OnCo

OnCo: total information dominance on cancer. A public, cited knowledge graph of oncology with a website, JSON API, MCP server and CLI: one page per cancer, treatment, target, trial, institution, person and idea.

shobhitsrivastava-ds /ML-MT-WebApp

该项目专注于基于机器学习的医学检测网络应用，利用机器学习的概念对各种疾病进行预测。

CBICA /CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

PortPy-Project /PortPy

Opensource Python project for cancer radiation treatment planning [NeurIPS'26, AAPM'23]

griffithlab /pVACtools

该项目在 GitHub 上没有填写描述

kritikaparmar-programmer /HealthCheck

Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.

greenelab /tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data

marakeby /pnet_prostate_paper

P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

OpenGene /MutScan

Detect and visualize target mutations by scanning FastQ files directly

deep-learning-for-biology /notebooks

Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

BioDynaMo /biodynamo

BioDynaMo is a high-performance and modular, agent-based simulation platform.

kirbyju /TCIA_Notebooks

Notebooks for working with The Cancer Imaging Archive datasets. Have you written one? Submit a PR!

birkhoffkiki /GPFM

The official implementation of GPFM

OpenGene /GeneFuse

Gene fusion detection and visualization