single-cell-atac-seq 开源项目推荐（39 个）

zhanghao-njmu /SCP

端到端单细胞管道，旨在促进单细胞数据的全面分析和探索。

r3fang /SnapATAC

单细胞 ATAC-seq 分析流程

genecell /single-cell-papers-with-code

Papers with code for single cell related papers

kharchenkolab /numbat

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

yanwu2014 /swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

quadbio /scMultiome_analysis_vignette

单细胞 RNA-ATAC 多组学测序数据分析教程

genecell /COSG

使用 COSG 准确快速地识别细胞标记基因

Taiji-pipeline /Taiji

All-in-one analysis pipeline

cantinilab /Circe

Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.

UCSC-VLAA /EpiFoundation

Pytorch implementation of EpiFoundation

r3fang /snATAC

<<------ Use SnapATAC!!

p4rkerw /Muto_Wilson_NComm_2020

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

SUwonglab /scABC

该项目在 GitHub 上没有填写描述

p4rkerw /Wilson_Muto_NComm_2022

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

genecell /PIASO

PIASO: Precise Integrative Analysis of Single-cell Omics

kpatel427 /multiome_analysis

Scripts for sincle cell multiome analysis

cellgeni /cellatac

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

JGASmits /AnanseSeurat

Single cell ANANSE Gene-regulatory-network analysis from Seurat objects

swainasish /ScInfeR

graph-based cell type annotation toolkit for single-cell RNA-seq, ATAC-seq, and spatial omics

OpenOmics /cell-seek

One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.