scrna-pipeline 开源项目推荐（6 个）

zhanghao-njmu /SCP

端到端单细胞管道，旨在促进单细胞数据的全面分析和探索。

AntonioDeFalco /SCEVAN

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

mckellardw /scMuscle

The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

luglilab /NaCl-enhances-CD8-T-cell-effector-functions-in-cancer-immunotherapy

Integration analysis with Scanpy and scRNAseq TME from blueprint

OlivierRaineteauSBRI /scRNASeq

Repo linked to our recent publication in Science Advances

DarkOxygen123 /Polariseq

Atlas-scale single-cell RNA-seq analysis in Python with a Rust core. Plans memory before reading; runs in memory or out of core.