phylip 开源项目推荐（13 个）

edgardomortiz /vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

evolbioinfo /goalign

Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.

paulmaier /fasta2genotype

Convert STACKS fasta to many genotype formats

jamesjcai /MBEToolbox

MBEToolbox: Matlab toolbox for molecular evolution

btmartin721 /file_converters

File conversion scripts for DNA sequence data

btmartin721 /phylip2eigenstrat

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

btmartin721 /SNPio

API to read, write, and filter DNA sequence alignment files

cnr-ibba /nf-treemix

A nextflow pipeline which executes treemix on a population of interest

adamallo /phylip

Repository with Phylip 3.697 with binaries for Apple Silicon

yudalang3 /egps-oneBuilder

GUI and CLI workflow for phylogenetic tree construction, tanglegram comparison, and optional Foldseek protein-structure similarity.

btmartin721 /makePopMap

Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files

kyungtaekLIM /seqlim

Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)

shandley /phylip-archaeology

Preserving, mining, and modernizing PHYLIP's algorithmic legacy — 35,805 lines of Rust, 1,050 tests, zero dependencies