foldseek 开源项目推荐（18 个）

westlake-repl /SaProt

Saprot：具有结构字母表的蛋白质语言模型（AA+3Di）

steineggerlab /folddisco

Fast indexing and search of discontinuous motifs in protein structures

soedinglab /MMseqs2-App

MMseqs2 app to run on your workstation or servers

althonos /mini3di

A NumPy port of the foldseek code for encoding protein structures to 3di.

cvigilv /ResidueFisher

生物信息学协议，旨在挖掘蛋白质链序列和结构水平的信息，以检测可能的进化保守残基。

cyanheads /protein-mcp-server

Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.

yonesora56 /plant2human

Analysis workflow for novel gene search based on structural similarity search

xnought /protein-scatter

Visualizing 3D fragments of proteins in a scatterplot using Foldseek's 3Di and Transformers.

yudalang3 /egps-oneBuilder

GUI and CLI workflow for phylogenetic tree construction, tanglegram comparison, and optional Foldseek protein-structure similarity.

vib-training-conferences /protein-structure-analysis

该项目在 GitHub 上没有填写描述

proportionable-plaguespot199 /novel-workflow

Enable multi-AI collaboration to streamline novel writing with slash commands for planning, drafting, reviewing, and managing story workflows in Claude Code.

Ahmedt987456321 /protein-stack

Function prediction beyond the twilight zone with gated AlphaFold structure fusion - provenance-typed evidence, validated against three years of new annotations

Carlo-Broschi /bio-a_hfq-phylogenetics

Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification

pranavathiyani /strusel

StruSel: Structurome-wide Selectivity of pathogen-exclusive targets

juhyun302 /cafa6-protein-function

CAFA-6 단백질 기능 예측 · Foldseek 구조 유사도 기반 GO 전이 + 앙상블 (Kaggle 은메달, 92위)

pranavathiyani /amrfold

Structure-informed AMR resistance protein miner

xnought /hyperprot

Many-to-many protein search and querying with Foldseek

amey-agarwal /Remote-Homolog-Alignment

investigating primitive protein coding patterns using AlphaFold2, 2D structure representation and multiple sequence alignment