immunotherapy 开源项目推荐（150 个）

immunomind /immunarch

🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design

griffithlab /pVACtools

该项目在 GitHub 上没有填写描述

mims-harvard /Medea

Medea：一种用于治疗发现的组学人工智能代理

mims-harvard /COMPASS

Generalizable AI predicts immunotherapy outcomes across cancers and treatments

immunomind /covid19

🦠 List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

bm2-lab /pTuneos

pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data

XSLiuLab /tumor-immunogenicity-score

TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

Xinglab /IRIS

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

xjtu-omics /msisensor-rna

MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

ylab-hi /ScanNeo2

Snakemake-based computational workflow for neoantigen prediction from diverse sources

lrgr /multifactorial-immune-response

Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features

XSLiuLab /Immunoediting

Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution

LiaoWJLab /TMEclassifier

A classifier for tumor microenvironment subtype based on ensemble machine learning models

mims-harvard /COMPASS-web

Web Companion for Generalizable AI predicts immunotherapy outcomes across cancers and treatments

raghavagps /algpred2

A machine learning based method for predicting, scanning and mapping allergenic regions in an allergen

XSLiuLab /BioForum2019-TIGS-poster

A poster showing TIGS project at BioForum2019, ShanghaiTech University

villani-lab /ircolitis

Analysis of single-cell RNA-seq data from patients with immunotherapy-related colitis.

XSLiuLab /neoantigen_depletion

neoantigen depletion checking and detection

raghavagps /ifnepitope2

Prediction of interferon-gamma inducing peptides using alignment-based and alignment-free methods

ShixiangWang /ImmuneDR

A Community Curated Immune Resource Database in R format