gtf 开源项目推荐（60 个）

NBISweden /AGAT

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

tariqdaouda /pyGeno

个性化基因组学与蛋白质组学。主食：Ensembl，配菜：SNP

igordot /genomics

A collection of scripts and notes related to genomics and bioinformatics

sagnikbanerjee15 /Finder

A fully automated gene annotator from RNA-Seq expression data

sbslee /fuc

Frequently used commands in bioinformatics

dputhier /pygtftk

A python package and a set of shell commands to handle GTF files

pbenner /gonetics

Go / Golang Bioinformatics Library

junjunlab /BioSeqUtils

Extract Sequence from Genome According to Annotation File

alejandrogzi /gtfsort

a lexicographically-based GTF/GFF sorter

alejandrogzi /gxf2bed

fastest GTF/GFF-to-BED converter chilling around

tjparnell /biotoolbox

Tools for querying and analysis of genomic data

dwpeng /filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

alejandrogzi /bed2gtf

high-performance BED-to-GTF converter written in Rust

zyxue /gtf2csv

Convert genome annotation GTF file into plain CSV format

BioInterchange /Ontologies

Home of the Genomic Feature and Variation Ontology (GFVO)

Kuanhao-Chao /gffbase

🧬 GFFBase — Rust+DuckDB GFF3/GTF engine

chasewnelson /EBT

Evolutionary Bioinformatics Toolkit (EBT)

deeptools /deeptools_intervals

A python library for constructing interval trees with associated exon/annotation information

anergictcell /atg

A Rust library and CLI tool to handle genomic transcripts

guokai8 /gff2gene

Plot gene structure