microscopy 开源项目推荐（1,156 个）

deepinv /deepinv

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

computational-cell-analytics /micro-sam

Segment Anything for Microscopy

3dem /relion

Image-processing software for cryo-electron microscopy

BMIRDS /deepslide

《自然科学报告》论文代码，题为“深神经网络切除肺腺癌切片的病理学层面组织学模式分类”。用于高分辨率全片图像分类的滑动窗口框架，通常用于显微镜或组织病理图像。

rapidsai /cucim

NVIDIA cuCIM - GPU-accelerated image processing library

Dana-Farber-AIOS /pathml

Tools for computational pathology

TIO-IKIM /CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

pycroscopy /pycroscopy

纳米尺度材料成像数据的科学分析

DeepTrackAI /DeepTrack2

DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.

clEsperanto /pyclesperanto_prototype

GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data

brainglobe /cellfinder

Automated 3D cell detection in very large images

pycroscopy /atomai

Deep and Machine Learning for Microscopy

AllenCellModeling /aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

PytorchConnectomics /pytorch_connectomics

PyTorch Connectomics: segmentation toolbox for EM connectomics

hallvaaw /awesome-biological-image-analysis

A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.

brainglobe /brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

scalableminds /webknossos

Visualize, share and annotate your large 3D images online

MatthewFilipovich /torchoptics

基于PyTorch构建的可微波光学仿真库

seung-lab /cloud-volume

Read and write Neuroglancer datasets programmatically.

zeiss-microscopy /OAD

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.