wikipathways 开源项目推荐（32 个）

cokelaer /bioservices

通过Python访问生物网络服务。

wikipathways /pywikipathways

Python Client Package for WikiPathways

wikipathways /wikipathways-database

WikiPathways Database

wikipathways /wikipathways.org

The main web site for the WikiPathways project.

SyNUM-lab /PinPath

R package for pathway visualization

wikipathways /GPML2RDF

GPML2RDF converter

egonw /wikipathways-chromosomes

Mapping WikiPathways to chromosomes

bio2bel /wikipathways

Integration of pathway-related information from WikiPathways in BEL

wikipathways /nanopublications

Project to convert content of WPRDF into nanopublications.

marvinm2 /molAOP-analyser

Key Event enrichment of gene-expression data against molecular Adverse Outcome Pathways — Fisher/ORA and GSEA with FDR correction, interactive Cytoscape KE networks, batch cross-condition comparison and PDF reports. Consumes the molAOP Builder's mapping API.

eonurk /cinaR-genesets

Ready-to-use curated genesets for cinaR

wikipathways /reactome2gpml-converter

Converts Reactome pathways to GPML format

wikipathways /SARS-CoV-2-WikiPathways

Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.

wikipathways /SPARQLQueries

Queries for the WikiPathways SPARQL endpoint.

francescopatane96 /RNA-seq_Pipeline

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…

bioclipse /bioclipse.wikipathways

Bioclipse plugins for WikiPathways and PathVisio

wikipathways /summit2018

WikiPathways Summit Planning

dhimmel /pathways

A compilation of pathway gene sets

larsgw /gpml-rhea

Collect chemical reactions from a GPML file and look for matching Rhea equations.

wikipathways /WikiPathways-SPARQL-book

WikiPathways SPARQL Book