single-cell-sequencing 开源项目推荐（22 个）

zhanghao-njmu /SCP

端到端单细胞管道，旨在促进单细胞数据的全面分析和探索。

pwwang /scplotter

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.

statgen /popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

tidyomics /tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

jaydu1 /VITAE

Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

paulranum11 /SPLiT-Seq_demultiplexing

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

single-cell-genetics /MQuad

Tool for modelling of mitochondrial heteroplasmy

p4rkerw /Wilson_Muto_NComm_2022

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

rezakj /scSeqR

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

sandberg-lab /Spreading-Correction

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

lab-conrad /resVAE

resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.

LittleBearX /Sc_RNA_seq

Script for my thesis of single cell rna seq

pdexheimer /scuttle

A command-line utility, a la samtools, that helps to manage and manipulate single-cell data files

Griffan /popscle

(NOTE: This is a development fork, please refer to official repo at statgen: https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools

raghavagps /HNSCPred

A computational approach tool to predict Head and Neck Cancer affected patients from their single cell RNA seq data.

nkirtipal /Celltype-Annotation-Benchmark

Reproducible benchmark of four scRNA-seq cell type annotation methods (SingleR, CellTypist, ACTINN, scANVI) on PBMC3K

dhivyaa-6 /Miscellaneous-R-Scripts

该项目在 GitHub 上没有填写描述

coldham10 /SCarborSNV

SCarborSNV is an efficient algorithm for phylogeny aware genotyping of single cell genomes, using dynamic programming and neighbor joining.

Sehun-Choi /med-computation

A personal archive organizing my study notes and foundational codes for computational medicine and AI.

willisbillis /MAPseq

This repository provides an end-to-end open source pipeline for the processing of MAPseq (Marker Assisted Programming sequencing) data.