sequence-alignment 开源项目推荐（538 个）

biopython /biopython

Official git repository for Biopython (originally converted from CVS)

lh3 /minimap2

用于基因组和拼接的核酸序列的通用成对对齐器

lh3 /bwa

Burrow-Wheeler Aligner用于短读对齐（请参阅minimap 2了解长读对齐）

bbuchfink /diamond

Accelerated BLAST compatible local sequence aligner.

scikit-bio /scikit-bio

scikit-bio：一个社区驱动的生物信息学Python库，提供通用的数据结构、算法和教育资源。

bwa-mem2 /bwa-mem2

bwa-mem 的下一个版本

torognes /vsearch

多功能的开源微生物组分析工具

biojava /biojava

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Martinsos /edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

lh3 /minigraph

Sequence-to-graph mapper and graph generator

seqan /seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

lh3 /miniprot

通过拼接和移码将蛋白质与基因组对齐

microsoft /bistring

Bidirectionally transformed strings

lh3 /minibwa

Successor of bwa-mem for short-read alignment

wurmlab /sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

shenwei356 /LexicMap

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

moshi4 /pyMSAviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

TimoLassmann /kalign

A fast multiple sequence alignment program.

lh3 /ksw2

Global alignment and alignment extension

cogent3 /cogent3

Comparative Genomics Toolkit 3