pymol-plugin 开源项目推荐（60 个）

cbalbin-bio /pymol-color-alphafold

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

MengwuXiao /GetBox-PyMOL-Plugin

一个用于计算LeDock、AutoDock和AutoDock Vina对接盒的PyMOL插件。

MooersLab /pymolshortcuts

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

pymodproject /pymod

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

paiardin /DockingPie

A Consensus Docking Plugin for PyMOL

smutao /PyVibMS

A PyMOL plugin for visualizing vibrations in molecules and solids

KodyKlupt /PromptMOL

Control PyMOL with natural language prompts using an LLM to make better figures, analyze structures, and more...

patonlab /wSterimol

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

smutao /LModeA-nano

calculate chemical bond strength in solids, surfaces and molecules

rasbt /BondPack

A collection of PyMOL plugins to visualize atomic bonds.

rinikerlab /restraintmaker

Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.

LBC-LNBio /parKVFinder

parKVFinder: thread-level parallel KVFinder

Masterchiefm /pymol-ai-assistant

A PyMOL plugin that enable ai-assistant. You can use human words to manipulate the molecule.

unizar-flav /PyViewDock

Docking viewer plug-in for PyMOL

LBC-LNBio /parKVFinder-win

parKVFinder-win: thread-level parallel KVFinder for Windows

NRGlab /NRGsuite

NRGsuite is a PyMOL plugin (GUI) for FlexAID

andreassag /pymol-ramachandran

A simple script to generate Ramachandran plot from Pymol.

RUBi-ZA /pyMODE-TASK

MODE-TASK plugin for PyMOL

TakumiOtagaki /PseudoknotVisualizer

Pymol Extension for the Visualization of the RNA pseudoknots.

GoetzParsiegla /Smina-plugin

This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.