homology-modeling 开源项目推荐（19 个）

pymodproject /pymod

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

choderalab /ensembler

Automated omics-scale protein modeling and simulation setup.

PhilippJunk /homelette

A unified and modular interface to homology modelling software

rribeiro-sci /pygomodo

GPCRs modeling and docking with python

HongYhong /An-automated-pipeline-for-homology-modeling

An automated pipeline for homology-modeling based on modeller

PhyloSofS-Team /PhyloSofS

A tool to model the evolution and structural impact of alternative splicing

Aaryesh-AD /Swiss_Model_Batch_Processor

Designed for batch submission of multiple target sequences using a single structural template in SwissModel

psipred /bioserf

Fully automated homolgy modelling suite

mrueda /ALiBERO

Software for performing Automatic Ligand-guided Backbone Ensemble Receptor Optimization with ICM

StrBio /strbio2022_23

Structural Bioinformatics Course @UAM

eved1018 /EESMHM

Energy Evaluation of Single Mutant Homology Models

shivChitinous /Modeller

Comparative homology modelling of SARSCov2 NSP4 subregion using Modeller

ghoshparnabali /Molecular-Docking-and-ADMET-Profiling-of-Cyanobacterial-Natural-Products-against-BRCA2-DBD

This repository contains an end-to-end, fully GUI/web-based dual-receptor molecular docking and ADMET profiling pipeline of four cyanobacterial natural products — scytonemin, phycocyanobilin, lyngbyabellin A and nostocarboline — against the BRCA2 DNA-binding domain using PyMOL, AutoDock Vina, PLIP, SwissADME, and ADMETlab 3.0.

saysayani11 /CryptochromeModelling

Homology Modelling of the human cryptochrome-1 using mouse cryptochrome-1

Raminyazdani /protein-homology-modeling-modeller

A Python-based comparative modeling workflow using MODELLER to build homology models from a target FASTA and template PDB, with comparison against a Swiss-Model structure.

rania-derouich /homology-modeling-alpha-amylase

Homology modeling of alpha-amylase using bioinformatics tools to predict 3D protein structure and analyze structural features.

amaurypm /assess_dope

Assess models previously generated with modeller with the DOPE method

kushiiitd05 /MDMA-DeNovoDock

Computer-Aided Drug Design (IIIT Delhi): DRT3 anti-phage target pitch (PDB 9Z6Y) and MODELLER homology-modelling pipelines.

aryanteng /Homology-Modelling

Homology models of ABCA1 variants built on PDB 5XJY with MODELLER, scored by DOPE and GA341.