population-genetics 开源项目推荐（456 个）

ClawBio /ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

merenlab /anvio

An analysis and visualization platform for 'omics data

projectglow /glow

An open-source toolkit for large-scale genomic analysis

knausb /vcfR

Tools to work with variant call format files

nf-core /eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

lh3 /psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

royfrancis /pophelper

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

starskyzheng /panpop

Application of pan-genome for population

moiexpositoalonsolab /grenepipe

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

chasewnelson /SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

bacpop /PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

BGI-shenzhen /VCF2Dis

VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format

precimed /mixer

Causal Mixture Model for GWAS summary statistics

AI-sandbox /neural-admixture

Rapid population clustering with autoencoders

grunwaldlab /poppr

🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction

Sh1ne111 /KMERIA

A KMER-based genome-wIde Assocation testing approach on polyploids

lczech /genesis

A library for working with phylogenetic and population genetic data.

CBIIT /LDlinkR

LDlinkR

bodkan /slendr

Population genetic simulations in R

kr-colab /diploSHIC

feature-based deep learning for the identification of selective sweeps