pool-sequencing 开源项目推荐（8 个）

moiexpositoalonsolab /grenepipe

一个灵活、可扩展且可重现的管道，用于从原始序列读取中自动化变异调用，具有许多功能 - 适用于采样个体和池测序。

lczech /genesis

A library for working with phylogenetic and population genetic data.

lczech /grenedalf

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

MartaPelizzola /ACER

Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

jeffersonfparil /poolgen

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

ozankiratli /poolseq-VCF2FREQ

A tool to convert poolseq VCF to allele frequencies.

ozankiratli /PoolSeqFlow

A Nextflow pipeline for allele frequency analysis from pooled Illumina sequencing data

sofianatale /Applied_Genomics

This repository collects my project for the Applied Genomics course. It includes the presentation on the chromosome-scale reference genome of the Alpine marmot, integrating multi-omics to study hibernation and high-altitude adaptation. Teaching materials (notes, transcripts, slides) used during the course are also provided for study purposes.