16s 开源项目推荐（116 个）

nf-core /ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

FOI-Bioinformatics /flextaxd

FlexTaxD（灵活分类数据库）——创建、添加、合并不同的分类源（QIIME、GTDB、NCBI 等）并创建宏基因组数据库（如 kraken2、ganon 等）

Russel88 /DAtest

Compare different differential abundance and expression methods

rdpstaff /RDPTools

Collection of commonly used RDP Tools for easy building

Russel88 /MicEco

Various functions for analysis of microbial community data

ycl6 /16S-rDNA-V3-V4

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

epruesse /SINA

SINA - Reference based multiple sequence alignment

wijerasa /bioinformatics-projects

A Collection of Bioinformatics Projects

microsud /microbiomeutilities

The is mostly a wrapper tool using phyloseq and microbiome R packages.

KlausLi /Esp-Seplos-Controller

Seplos Controller mit Webseite Der Esp8266 ist über ein Rs485 Modul mit dem Seplos BMS verbunden und kann diesem seine Daten entlocken. Shutdown Button: Das BMS wird ausgeschaltet , selbe Art als ob man länger auf dem BMS tastschalter bleibt. Kurzum die Firmware die es hier zum Download gibt, liest das Bms aus und es lässt sich per Button Klick …

shandley /Microbiome-Analysis-Using-R

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

microgenlab /porefile

A Nextflow full-length 16S profiling pipeline for ONT reads

smdabdoub /phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

ifremer-bioinformatics /samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

pnnl /hundo

💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences.

quadram-institute-bioscience /dadaist2

Dadaist2 🟨 Highway to R

microUCPH /amplicon_data_analysis

Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

itsmisterbrown /microfiltR

accessory functions for processing microbial community data

adriaaula /dada2_guidelines

A repository with a general dada2 pipeline for amplicon processing

ElDeveloper /dogs

Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"