multiple-sequence-alignment 开源项目推荐（143 个）

sokrypton /ColabFold

Making Protein folding accessible to all!

microsoft /evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

refresh-bio /FAMSA

Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.

inab /trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

moshi4 /pyMSAviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

yangao07 /abPOA

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

diegozea /MIToS.jl

A Julia package to analyze protein sequences, structures, and evolutionary information

Sam-Sims /salti

A fast, feature rich multiple sequence alignment browser for the terminal.

gcorso /NeuroSEED

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

elttaes /Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

psipred /DMPfold2

Fast and accurate protein structure prediction

morispi /CONSENT

可扩展长读自校正和装配抛光，支持多序列对齐

jvogan /motif

An AI-native molecular biology workbench for Claude Science: Claude opens sequence files and prepares analyses on request; you annotate, align, and review them in an interactive workspace.

jasperlinthorst /reveal

Graph based multi genome aligner

althonos /pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

cmzmasek /archaeopteryx-js

Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.

thekaplanlab /msabrowser

🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

yangao07 /TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

jaswindersingh2 /SPOT-RNA2

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

sanderlab /alignmentviewer

Multiple sequence alignment visualizer