contigs 开源项目推荐（45 个）

ablab /quast

Genome assembly evaluation tool

tseemann /abricate

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

Gabaldonlab /redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

oschwengers /platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

tobiasrausch /wally

Wally: Visualization of aligned sequencing reads and contigs

nf-core /funcscan

(Meta-)genome screening for functional and natural product gene sequences

COMBINE-lab /pufferfish

An efficient index for the colored, compacted, de Bruijn graph

mcveanlab /mccortex

De novo genome assembly and multisample variant calling

smaegol /PlasFlow

Software for prediction of plasmid sequences in metagenomic assemblies

metagentools /GraphBin

✨🧬 Refined binning of metagenomic contigs using assembly graphs

metagentools /MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

tanghaibao /allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

morispi /CONSENT

可扩展长读自校正和装配抛光，支持多序列对齐

metagentools /GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

merenlab /reads-for-assembly

Simulate metagenomic short reads from one or more populations.

metagentools /gbintk

🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

raymondkiu /bioinformatics-tools

Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix and suffix) etc

LeonDlugosch /MetaSeq-Toolkit

This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.

haradama /PlasmidPicker

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

mtisza1 /Cenote_Unlimited_Breadsticks

DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report