gff 开源项目推荐（53 个）

NBISweden /AGAT

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

moshi4 /pyGenomeViz

A genome visualization python package for comparative genomics

NAL-i5K /GFF3toolkit

Python programs for processing GFF3 files

wurmlab /flo

Same species annotation lift over pipeline.

chrovis /cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure

wrf /genomeGTFtools

convert various features into a GFF-like file for use in genome browsers

telatin /bamtocov

🏔 从BAM/CRAM文件中提取覆盖范围，支持目标 📊

sbslee /fuc

Frequently used commands in bioinformatics

baoxingsong /GEAN

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

ginkgobioworks /edge

Efficiently keep track of changes to genomes

alejandrogzi /gxf2bed

fastest GTF/GFF-to-BED converter chilling around

bpucker /RNA-Seq_analysis

scripts for RNA-Seq analysis

miRTop /mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

NickJD /StORF-Reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

zyxue /gtf2csv

Convert genome annotation GTF file into plain CSV format

NCBI-Hackathons /Master_gff3_parser

Convert sequence IDs between ucsc/refseq/genbank

LBGC-CFB /SpliceLauncher

RNAseq pipeline for alternative splicing junctions

tdseher /addtag-project

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

acsamson /ImageFusion-Algorithm

ImageFusion algorithm, SSIM and PSNR evaluation（常见图像融合算法以及SSIM和PSNR评价

chasewnelson /EBT

Evolutionary Bioinformatics Toolkit (EBT)