genome-browser 开源项目推荐（70 个）

GMOD /jbrowse

JBrowse 1，一个使用 JavaScript 和 HTML5 构建的功能齐全的基因组浏览器。JBrowse 2 参见 https://github.com/GMOD/jbrowse-components。

kcleal /gw

Genome browser and variant annotation

tariqdaouda /pyGeno

个性化基因组学与蛋白质组学。主食：Ensembl，配菜：SNP

yatisht /usher

Ultrafast Sample Placement on Existing Trees

fmalmeida /bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

fanglu0411 /sgs

SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.

MoMI-G /MoMI-G

Modular Multi-scale Integrated Genome Graph Browser

lidaof /eg-react

WashU Epigenome Browser (2nd generation, 2017-2022)

epigen /genome_tracks

A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

sciguy /cgview-js

CGView.js creates interactive circular and linear genome maps.

yuifu /millefy

Millefy: Genome browser-like visualization of single-cell RNA-seq dataset

GMOD /jbrowse-jupyter

A python package for showing JBrowse views

Marlin-Na /TnT

Interactive visulizations for track-based genomic data in R

genenotebook /genenotebook

A collaborative notebook for genes and genomes

JetBrains-Research /jbr

JBR Genome Browser

yatisht /strain_phylogenetics

Tools for analyzing and comparing SARS-CoV-2 phylogenies

guigolab /annotrieve

Annotrieve: a central hub for eukaryotic genome annotations

DBKERO /genome_browser

Simple and fast html5 canvas based genome browser

dlesl /clonifier

A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly

Ensembl /trackhub-registry

Specifications and implementation of the TrackHub registry