fine-mapping 开源项目推荐（38 个）

omerwe /polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

mmkim1210 /GeneticsMakie.jl

使用 Makie.jl 进行高性能的遗传学和基因组学相关数据可视化

sankaranlab /SCAVENGE

SCAVENGE 是一种在单细胞分辨率下优化特定细胞功能与遗传关联推断的方法。

opentargets /gentropy

Open Targets python framework for post-GWAS analysis

variani /finemapr

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

mancusolab /sushie

Software to perform multi-ancestry SNP fine-mapping on molecular data

WansonChoi /HATK

A collection of modules to process and analyze IMGT-HLA sequences.

caulilin /QTG_Seq

该项目在 GitHub 上没有填写描述

RajLabMSSM /ggLocusZoom

Create LocusZoom-style plots in R.

Jianhua-Wang /easyfinemap

user-friendly pipeline for GWAS fine-mapping

naim-panjwani /LocusFocus

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

junghyunJJ /marsR

MARS: Model-based Association test Reflecting causal Status — leverages allelic heterogeneity to boost GWAS locus-level association power from summary statistics (Genome Biol 2021)

czheluo /MBSA

Multple methods for BSA Pipeline

GangLiTarheel /DeepGWAS

DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network

RajLabMSSM /echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

gymrek-lab /happler

A haplotype-based fine-mapping method

jennasimit /flashfm

Flashfm: multi-trait fine-mapping that uses GWAS summary statistics from several traits. Updated and more flexible wrapper functions available at jennasimit.github.io/flashfmZero/

esohkevin /ei-gwas

gwas workflow from raw intensity data to in-silico functional mapping

wugene /RADAR_SNP

Find risk snp in the LD region of GWAS snps by convolutional neural network

RajLabMSSM /Fine_Mapping_Shiny

Shiny app for plotting and sharing fine-mapping results from echolocatoR