colocalization 开源项目推荐（65 个）

boxiangliu /locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

mmkim1210 /GeneticsMakie.jl

使用 Makie.jl 进行高性能的遗传学和基因组学相关数据可视化

xqwen /fastenloc

Colocalization analysis of genetic association signals

opentargets /gentropy

Open Targets python framework for post-GWAS analysis

RajLabMSSM /echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

ropensci /colocr

An R package for conducting co-localization analysis. Edit

RajLabMSSM /catalogueR

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

guillermocomesanacimadevila /drugMR

A multi-omic drug-target prioritisation pipeline

RajLabMSSM /echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

ape4fld /nf-genetic-correlations

Nextflow pipeline to perform genetic correlations with GWAS summary statistics (LDSC and LAVA)

emiglietta /coloc-game

Online app for playing the coLoc game (https://biop.github.io/coLoc/)

alexiaales /SpotitPy

An automated tool for Object-based colocalization in fluorescence microscopy images.

rsenft1 /FISH-IHC-Colocalization-in-ImageJ

An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.

ChenXiang96 /SlicerColoc-Z-Stats

A 3D Slicer extension for interactive 3D visualization and quantitative colocalization analysis of multi-channel confocal z-stack images.

Scaramir /HD_colocalization

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

umr-lops /s1swotcolocs

Python lib to create co-locations between Sentinel-1 IW or EW images and SWOT KaRin swath.

michael-denyer /pyLocusZoom

pyLocusZoom -- publication-ready GWAS visualization in Python: LocusZoom-style regional association plots with LD coloring, gene tracks and recombination overlays, plus Manhattan, QQ, Miami, eQTL, fine-mapping, PheWAS and forest plots. Dog and cat genomes built in.

ht-diva /pqtl_conditional

Fine mapping analysis within the pQTL pipeline project

jackgisby /mr-nextflow

MR for multiple exposures implemented using nextflow

davidpincus /cellquant

Quantitative fluorescence microscopy for biologists who don't code — a single-script pipeline for cell segmentation, puncta detection, and colocalization in 2D or natively in 3D