biomedical-image-processing 开源项目推荐（211 个）

Dana-Farber-AIOS /pathml

Tools for computational pathology

seung-lab /connected-components-3d

离散且连续多标签3D和2D图像上的连通分量。支持26、18和6的连接变体;周期边界（4、8和6）

cambridgeltl /visual-med-alpaca

Visual Med-Alpaca 是一款开源、多模态基础模型，专为生物医学领域设计，基于 LLaMa-7B 构建。

jvanvugt /pytorch-unet

Tunable U-Net implementation in PyTorch

seung-lab /euclidean-distance-transform-3d

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

OpenEIT /OpenEIT

Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods

seung-lab /kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

BiaPyX /BiaPy

Open source Python library for building bioimage analysis pipelines

PytorchConnectomics /pytorch_connectomics

PyTorch Connectomics: segmentation toolbox for EM connectomics

tkuanlun350 /3DUnet-Tensorflow-Brats18

3D Unet biomedical segmentation model powered by tensorpack with fast io speed

mlcommons /GaNDLF

A generalizable application framework for segmentation, regression, and classification using PyTorch

anjanatiha /Pneumonia-Detection-from-Chest-X-Ray-Images-with-Deep-Learning

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

seung-lab /cloud-volume

Read and write Neuroglancer datasets programmatically.

ELEKTRONN /elektronn3

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

sacmehta /YNet

Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images

yuanqing811 /ISIC2018

ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection

mattmacy /torchbiomed

Datasets, Transforms and Utilities specific to Biomedical Imaging

google-research /sofima

Scalable Optical Flow-based Image Montaging and Alignment

mirzaevinom /promise12_segmentation

Codes that I have written to complete promise12 prostate segmentation competition.

amrzhd /MRISkullStripping

Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset, enhancing neuroimaging preprocessing workflows.