biomedical 开源项目推荐（609 个）

allenai /scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

caufieldjh /awesome-bioie

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

kyegomez /Med-PaLM

Towards Generalist Biomedical AI

Gen-Verse /JEPA-Anything

JEPA-Anything: Learning Predictive Models across Different Worlds

cambridgeltl /visual-med-alpaca

Visual Med-Alpaca 是一款开源、多模态基础模型，专为生物医学领域设计，基于 LLaMa-7B 构建。

OmooLab /BioxelNodes

For scientific volumetric data visualization in Blender.

biocypher /biocypher

A unifying framework for biomedical research knowledge graphs

zjunlp /Mol-Instructions

[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

MousaviSajad /SleepEEGNet

SleepEEGNet：采用序列对序列深度学习方法的自动睡眠阶段评分

BioTender-max /awesome-bio-agent-skills

精选的AI代理技能集，涵盖生物医学研究，涵盖基因组学、蛋白质组学、单细胞分析、临床人工智能和蛋白质设计。

typedb /biograkn

BioGrakn Knowledge Graph

epigen /MrBiomics

MrBiomics: Composable modules and recipes automate bioinformatics for multi-omics analyses

cyanheads /pubmed-mcp-server

通过MCP搜索PubMed/Europe PMC、获取文章和全文（PMC/EPMC/Unpaywall）、引用和MeSH术语。STDIO或可流式HTTP。

Correr-Zhou /RepMode

[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".

Lee-Gihun /MEDIAR

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

Gaoyuan-0423 /biomedical-paper-reader

生物医学论文精读 Skill 与本地阅读 App：逐图解析、证据评估、研究设计借鉴，支持中文、英文及双语报告。 | Biomedical paper-reading skill & local app: figure analysis, evidence appraisal, and research design insights. Chinese, English & bilingual reports.

mims-harvard /OptimusKG

A modern multimodal knowledge graph with type-specific metadata across biomedical domains.

geniusrise /awesome-healthcare-datasets

Healthcare and biomedical datasets, for AI/ML

SCIInstitute /SCIRun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

dreji18 /Bio-Epidemiology-NER

Recognize bio-medical entities from a text corpus