structural-bioinformatics 开源项目推荐（184 个）

biojava /biojava

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

JuliaMolSim /Molly.jl

Molecular simulation in Julia

rdk /p2rank

P2Rank：基于机器学习从蛋白质结构预测蛋白-配体结合位点。

haddocking /pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

lightdock /lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

carlocamilloni /Structural-Bioinformatics

This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202

BioJulia /BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures

harryjubb /arpeggio

Calculation of interatomic interactions in molecular structures

MooersLab /pymolshortcuts

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

diegozea /MIToS.jl

A Julia package to analyze protein sequences, structures, and evolutionary information

NoahHenrikKleinschmidt /buildamol

A fragment-based molecular assembly toolkit

labstructbioinf /localpdb

Python package to manage protein structures and their annotations

jgreener64 /pdb-benchmarks

Benchmarking common tasks on proteins in various languages and packages

Pranavkhade /PACKMAN

Python package built around protein structure and dynamics. OpenBabel-inspired objects.

jgreener64 /Bio3DView.jl

A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto

n-szulc /fingeRNAt

Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.

Ahhmedsamehh /Bioinformatics_resources

This repo is dedicated to make bioinformatics resources available for anyone who wish to enter this field. (You may find it useful or not useful based on your level). I am still embarking my path in the field, just posting things based on my knowledge and the things which worked for me personally, they may/may not work with you, totally fine.

samirelanduk /molstar-react

Molstar as a react component

SENSAAS /sensaas

Shape-based alignment of molecules using 3D point-based representation

jgreener64 /ProteinEnsembles.jl

Generate and perturb protein structural ensembles using the ExProSE algorithm