binding-sites 开源项目推荐（31 个）

rdk /p2rank

P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.

wlsong /PyLipID

A python toolkit for analysing membrane protein-lipid interactions.

LBC-LNBio /pyKVFinder

pyKVFinder: Python-C parallel KVFinder

Rostlab /bindPredict

Prediction of binding residues for metal ions, nucleic acids, and small molecules.

salilab /cryptosite

Library for prediction of cryptic binding sites

CSBG-LSU /BionoiNet

Pytorch implementation of BionoiNet, which is a deep learning-based software to classify ligand-binding sites.

jahnl /binding_in_disorder

Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis

shiwentao00 /Graphsite-classifier

Ligand-binding site classification with deep graph neural networks.

ZarnackGroup /BindingSiteFinder

Package for the definition of biniding sites for iCLIP data

autosome-ru /motif_benchmarks

Benchmarks collection for GRECO TFBS Benchmarking Initiative

luk27official /cryptoshow

CryptoShow is a web application for detection of cryptic protein binding sites.

KrumkachevaLab /EPR-BindingSite

Identification of Protein-Ligand Binding Sites using dipolar EPR data

benoukraflab /forkedTF

ForkedTF is an R-library that introduces Forked-PMW (FPMW) and Forked-Sequence Logos (F-Logos) to provide a more comprehensive depiction of the sequence affinity of a Transcription factor (TF) of interest, including its DNA sequence and DNA methylation level, along with a segregated list of partner TFs.

mackerell-lab /FDA-compounds-SILCS-Hotspots-SI

SI data repository for the SILCS-Hotspots / druggable sites paper

illusionic /BSite-pro

Code for paper titled, "BSite-pro: A Novel Approach for Binding Site Prediction in Protein Sequences".

wisstock /SiteSet

Toolkit for integrative analysis RNA's functional sites

sb-ncbr /RBP-Tar

RBP-Tar is a web server for the retrieval of experimentally derived binding sites for hundreds of RNA Binding Proteins on the human genome.

SidSin0809 /receptor-peptide-interface-mapper

High-throughput identification of receptor–peptide contact residues from PDB/mmCIF structures (Python 3, Biopython, multithreaded)

deepfire /youtrack

Access a Jetbrains YouTrack instance.

salilab /cryptosite-web

Web server for prediction of cryptic binding sites