snps 开源项目推荐（179 个）

tseemann /snippy

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Illumina /strelka

Strelka2 germline and somatic small variant caller

edgardomortiz /vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

tariqdaouda /pyGeno

个性化基因组学与蛋白质组学。主食：Ensembl，配菜：SNP

apriha /lineage

用于分析和探索遗传关系的工具

mentatpsi /OSGenome

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

cslarsen /arv

A fast 23andMe DNA parser and inferrer for Python

apriha /snps

tools for reading, writing, generating, merging, and remapping SNPs

neurogenomics /MAGMA_Celltyping

Find causal cell-types underlying complex trait genetics

cslarsen /dna-traits

A fast 23andMe genome text file parser, now superseded by arv

ropensci /rsnps

Wrapper to a number of SNP web APIs

BioJulia /PopGen.jl

Population Genetics in Julia

OpenMendel /SnpArrays.jl

Compressed storage for SNP data

chadlaing /Panseq

Pan-genomic sequence analysis

BioJulia /GeneticVariation.jl

Datastructures and algorithms for working with genetic variation

mkpython3 /Mutation-Simulator

A tool for simulating random mutations in any genome

huwenboshi /hess

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

adhikari-statgen-lab /fastman

An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.

pievos101 /PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses in R

xukaili /CandiHap

A haplotype analysis toolkit for natural variation study.