scrna-seq-data 开源项目推荐（25 个）

seandavi /awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

GfellerLab /SuperCell

Coarse-graining of large single-cell RNA-seq data into metacells

nsalomonis /altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

randel /MIND

Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution

oscar-franzen /PanglaoDB

metadata and data from the database

mckellardw /scMuscle

The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcriptomic data

multitalk /miRTalk

Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

ankitbioinfo /nico_tutorial

A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.

AllenInstitute /tasic2016data

Single cell transcriptomic data from Tasic, et al. (2016)

nlawlor /V-SVA

V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data

umangv /picturedrocks

PicturedRocks Single Cell Analysis Tool

Gina727 /scRNA-seq-analyst

ScRNA-seq Analysis Copilot serves as an interactive agent to learn single cell sequencing, answering questions and helping new learners to practice analysis.

Munfred /wormcells-data

Gene expression on C. elegans single cells

DaminK /GlobalGround-MetricLearning

Python implementation of the AISTATS2025 paper "Global Ground Metric Learning with Applications to scRNA data" by Damin Kühn nad Michael T. Schaub. To use GGML on your own data, refer to the python package below:

Rongtingting /CNV_calling_Benchmark

Benchmarking records for scRNA-seq CNV detection.

Perik-Zavodskii /ErythroOrigin

Predict human Erythroid cell tissue of origin using the BD Rhapsody single cell Immune responce panel gene expression data

himelmallick /BenchmarkSingleCell

Large-scale Benchmarking of Single-cell Differential Expression Analysis Methods

UcarLab /V-SVA

V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data

OlivierRaineteauSBRI /scRNASeq

Repo linked to our recent publication in Science Advances

inuritdino /HyperInflamDataProcessing

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735