salmon 开源项目推荐（138 个）

COMBINE-lab /salmon

🐟 🍣 🍱 利用选择性比对实现RNA测序读段的高度准确且极快的转录本级定量

jeonglab-bcm /SalmonTE

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

thelovelab /fishpond

Differential expression and allelic analysis, nonparametric statistics

mastodon /ostatus2

A Ruby toolset for interacting with the OStatus suite of protocols

Novartis /pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

yyoshiaki /ikra

RNAseq pipeline centered on Salmon

Juke34 /AliNe

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

tucca-cellag /tucca-rna-seq

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

OStatus /spec

OStatus Specification

AyehBlk /RAPTOR

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

pfefferle /wordpress-salmon

A salmon plugin for WordPress

iamcal /homespring.js

A JavaScript interpreter for Homespring

SoniaRuiz /coexp-website

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.

nwfsc-cb /rCAX

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

dapperstats /salvage

Code for smooth interactions with the salvage database

sk7-dotcom /Evaluating_RNAseq_aligners

Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data

ORE-DiaPFC /Abondance

Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC

asendia /salmonfit

Frontend code of salmonfit.com

bissessk /RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

InfiniteTeam /SalmonBot

연어봇 - SalmonBot