rnaseq 开源项目推荐（429 个）

COMBINE-lab /salmon

🐟 🍣 🍱 利用选择性比对实现RNA测序读段的高度准确且极快的转录本级定量

galaxyproject /training-material

A collection of Galaxy-related training material

sdparekh /zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

sigven /pcgr

Personal Cancer Genome Reporter (PCGR)

helicalAI /helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

mikelove /bioc-refcard

Bioconductor cheat sheet

getzlab /rnaseqc

Fast, efficient RNA-Seq metrics for quality control and process optimization

cantinilab /scPRINT

🏃 The go-to single-cell Foundation Model

thelovelab /tximport

Transcript quantification import for modular pipelines

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

seqeralabs /RustQC

Fast genomics quality control tools for sequencing data, written in Rust.

genome /bfx-workshop

A course on genomics and bioinformatics from WashU

nextflow-io /rnaseq-nf

A proof of concept of RNAseq pipeline

earmingol /cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

nf-core /rnavar

gatk4 RNA variant calling pipeline

nf-core /scnanoseq

Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Russel88 /DAtest

Compare different differential abundance and expression methods

SciLifeLab /NGI-RNAseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

owkin /PyDeconv

Python implementation of bulk RNAseq deconvolution algorithms

patidarr /ngs_pipeline

使用snakemake实现外显子组/捕获/RNASeq流水线